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biology/iqtree: Update to 2.4.0

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PR:		284746
Release Notes:	https://github.com/iqtree/iqtree2/releases/tag/v2.4.0
Sponsored by:	The FreeBSD Foundation

Co-authored-by:	Alven <alster@vinterdalen.se>
This commit is contained in:
Joseph Mingrone 2025-02-12 10:42:08 -04:00
parent bc24a3b94c
commit 6ac077207c
No known key found for this signature in database
GPG key ID: 36A40C83B0D6EF9E
3 changed files with 22 additions and 11 deletions
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11
biology/iqtree/Makefile
View file

@ -1,7 +1,6 @@
PORTNAME= iqtree
DISTVERSIONPREFIX= v
DISTVERSION = 2.3.6
PORTREVISION= 2
DISTVERSION= 2.4.0
CATEGORIES= biology
MAINTAINER= jrm@FreeBSD.org
@ -12,17 +11,17 @@ LICENSE= GPLv2
LICENSE_FILE= ${WRKSRC}/LICENSE
BROKEN_aarch64= fails to compile: unrecognized command line option '-msse3'
BROKEN_armv6= fails to compile: unrecognized command line options '-m32' and '-msse3'
BROKEN_armv7= fails to compile: unrecognized command line options '-m32' and '-msse3'
BROKEN_i386= ld: error: unable to find library -latomic (see bug 230888)
BROKEN_powerpc64= fails to build: GCC version must be at least 4.8!
NOT_FOR_ARCHS= armv6 armv7 i386 powerpc
NOT_FOR_ARCHS_REASON= 32-bit compilation is not supported
LIB_DEPENDS= libboost_filesystem.so:devel/boost-libs
USES= cmake eigen:3
USE_GITHUB= yes
GH_PROJECT= iqtree2
GH_TUPLE= tothuhien:lsd2:125720d9da1281642053713d9b094d5bff2ce9cf:tothuhien/lsd2
GH_TUPLE= tothuhien:lsd2:c61110f3a4fa05325b45c97b2134792ff9d55d4c:tothuhien/lsd2 \
iqtree:cmaple:3946f47731699573ed2268e00aa7996a3458d4eb:iqtree/cmaple
PLIST_FILES= bin/iqtree
PORTEXAMPLES= custom_distributions.txt example.cf example.nex example.phy \

12
biology/iqtree/distinfo
View file

@ -1,5 +1,7 @@
TIMESTAMP = 1725465363
SHA256 (iqtree-iqtree2-v2.3.6_GH0.tar.gz) = 2d389ea74e19773496363cd68270b341ac7cc47c60e7f32859682403b34744cf
SIZE (iqtree-iqtree2-v2.3.6_GH0.tar.gz) = 6644218
SHA256 (tothuhien-lsd2-125720d9da1281642053713d9b094d5bff2ce9cf_GH0.tar.gz) = acab6984ceeb1e1c45f87bfb30cadd18c29b48088912e80521e8c875ce33a50b
SIZE (tothuhien-lsd2-125720d9da1281642053713d9b094d5bff2ce9cf_GH0.tar.gz) = 592579
TIMESTAMP = 1739123157
SHA256 (iqtree-iqtree2-v2.4.0_GH0.tar.gz) = 06a3351de0ed3c44a3e197e94a5d0cc3de7359c0be79eab1f41fb83459234619
SIZE (iqtree-iqtree2-v2.4.0_GH0.tar.gz) = 5524827
SHA256 (tothuhien-lsd2-c61110f3a4fa05325b45c97b2134792ff9d55d4c_GH0.tar.gz) = 9bbeaa0f8f35783c1d8dec74df6c93a804dbca808fa04484f9123de4e7258b53
SIZE (tothuhien-lsd2-c61110f3a4fa05325b45c97b2134792ff9d55d4c_GH0.tar.gz) = 1529381
SHA256 (iqtree-cmaple-3946f47731699573ed2268e00aa7996a3458d4eb_GH0.tar.gz) = 712016835e40c26c1e69529fca1bec46a7102ede3775e1b4b6589c4b6074410a
SIZE (iqtree-cmaple-3946f47731699573ed2268e00aa7996a3458d4eb_GH0.tar.gz) = 4806755

10
biology/iqtree/files/patch-cmaple_unittest_CMakeLists.txt Normal file
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@ -0,0 +1,10 @@
--- cmaple/unittest/CMakeLists.txt.orig 2025-02-11 20:40:54 UTC
+++ cmaple/unittest/CMakeLists.txt
@@ -16,7 +16,6 @@ target_link_libraries(
)
target_link_libraries(
cmaple_maintest
- GTest::gtest_main ## contains the main() function. No need to write one yourself
cmaple_utils
ncl nclextra
cmaple_model